Class: TnSeqLibrary

TnSeq_Library entity in the ENIGMA data model

classDiagram class TnSeqLibrary click TnSeqLibrary href "../TnSeqLibrary/" TnSeqLibrary : tnseq_library_genome TnSeqLibrary : tnseq_library_hit_rate_essential TnSeqLibrary : tnseq_library_hit_rate_other TnSeqLibrary : tnseq_library_id TnSeqLibrary : tnseq_library_n_barcodes TnSeqLibrary : tnseq_library_n_insertion_locations TnSeqLibrary : tnseq_library_n_mapped_reads TnSeqLibrary : tnseq_library_n_usable_barcodes TnSeqLibrary : tnseq_library_name TnSeqLibrary : tnseq_library_primers_model

Slots

Name	Cardinality and Range	Description	Inheritance
tnseq_library_id	1 String	id field for TnSeq_Library	direct
tnseq_library_name	1 String	name field for TnSeq_Library	direct
tnseq_library_genome	1 String	genome field for TnSeq_Library	direct
tnseq_library_primers_model	1 String	primers_model field for TnSeq_Library	direct
tnseq_library_n_mapped_reads	0..1 Integer	n_mapped_reads field for TnSeq_Library	direct
tnseq_library_n_barcodes	0..1 Integer	n_barcodes field for TnSeq_Library	direct
tnseq_library_n_usable_barcodes	0..1 Integer	n_usable_barcodes field for TnSeq_Library	direct
tnseq_library_n_insertion_locations	0..1 Integer	n_insertion_locations field for TnSeq_Library	direct
tnseq_library_hit_rate_essential	0..1 Float	hit_rate_essential field for TnSeq_Library	direct
tnseq_library_hit_rate_other	0..1 Float	hit_rate_other field for TnSeq_Library	direct

Identifier and Mapping Information

Annotations

property	value
term	DA:0000060
used_for_provenance	True
process_types	['PROCESS:0000027']
process_inputs	[['Genome']]

Schema Source

from schema: https://w3id.org/enigma/enigma-cdm

Mappings

Mapping Type	Mapped Value
self	enigma:TnSeqLibrary
native	enigma:TnSeqLibrary

LinkML Source

Direct

name: TnSeq_Library
annotations:
  term:
    tag: term
    value: DA:0000060
  used_for_provenance:
    tag: used_for_provenance
    value: true
  process_types:
    tag: process_types
    value:
    - PROCESS:0000027
  process_inputs:
    tag: process_inputs
    value:
    - - Genome
description: TnSeq_Library entity in the ENIGMA data model
from_schema: https://w3id.org/enigma/enigma-cdm
slots:
- tnseq_library_id
- tnseq_library_name
- tnseq_library_genome
- tnseq_library_primers_model
- tnseq_library_n_mapped_reads
- tnseq_library_n_barcodes
- tnseq_library_n_usable_barcodes
- tnseq_library_n_insertion_locations
- tnseq_library_hit_rate_essential
- tnseq_library_hit_rate_other

Induced

name: TnSeq_Library
annotations:
  term:
    tag: term
    value: DA:0000060
  used_for_provenance:
    tag: used_for_provenance
    value: true
  process_types:
    tag: process_types
    value:
    - PROCESS:0000027
  process_inputs:
    tag: process_inputs
    value:
    - - Genome
description: TnSeq_Library entity in the ENIGMA data model
from_schema: https://w3id.org/enigma/enigma-cdm
attributes:
  tnseq_library_id:
    name: tnseq_library_id
    annotations:
      type_term:
        tag: type_term
        value: ME:0000276
    description: id field for TnSeq_Library
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    identifier: true
    alias: tnseq_library_id
    owner: TnSeq_Library
    domain_of:
    - TnSeq_Library
    range: string
    required: true
  tnseq_library_name:
    name: tnseq_library_name
    annotations:
      unique:
        tag: unique
        value: true
      type_term:
        tag: type_term
        value: ME:0000262
    description: name field for TnSeq_Library
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: tnseq_library_name
    owner: TnSeq_Library
    domain_of:
    - TnSeq_Library
    range: string
    required: true
  tnseq_library_genome:
    name: tnseq_library_genome
    annotations:
      foreign_key:
        tag: foreign_key
        value: Genome.name
      type_term:
        tag: type_term
        value: ME:0000246
    description: genome field for TnSeq_Library
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: tnseq_library_genome
    owner: TnSeq_Library
    domain_of:
    - TnSeq_Library
    range: string
    required: true
  tnseq_library_primers_model:
    name: tnseq_library_primers_model
    annotations:
      type_term:
        tag: type_term
        value: ME:0000263
    description: primers_model field for TnSeq_Library
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: tnseq_library_primers_model
    owner: TnSeq_Library
    domain_of:
    - TnSeq_Library
    range: string
    required: true
  tnseq_library_n_mapped_reads:
    name: tnseq_library_n_mapped_reads
    annotations:
      units_term:
        tag: units_term
        value: UO:0000189
      type_term:
        tag: type_term
        value: ME:0000126
    description: n_mapped_reads field for TnSeq_Library
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: tnseq_library_n_mapped_reads
    owner: TnSeq_Library
    domain_of:
    - TnSeq_Library
    range: integer
  tnseq_library_n_barcodes:
    name: tnseq_library_n_barcodes
    annotations:
      units_term:
        tag: units_term
        value: UO:0000189
      type_term:
        tag: type_term
        value: ME:0000126
    description: n_barcodes field for TnSeq_Library
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: tnseq_library_n_barcodes
    owner: TnSeq_Library
    domain_of:
    - TnSeq_Library
    range: integer
  tnseq_library_n_usable_barcodes:
    name: tnseq_library_n_usable_barcodes
    annotations:
      units_term:
        tag: units_term
        value: UO:0000189
      type_term:
        tag: type_term
        value: ME:0000126
    description: n_usable_barcodes field for TnSeq_Library
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: tnseq_library_n_usable_barcodes
    owner: TnSeq_Library
    domain_of:
    - TnSeq_Library
    range: integer
  tnseq_library_n_insertion_locations:
    name: tnseq_library_n_insertion_locations
    annotations:
      units_term:
        tag: units_term
        value: UO:0000189
      type_term:
        tag: type_term
        value: ME:0000126
    description: n_insertion_locations field for TnSeq_Library
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: tnseq_library_n_insertion_locations
    owner: TnSeq_Library
    domain_of:
    - TnSeq_Library
    range: integer
  tnseq_library_hit_rate_essential:
    name: tnseq_library_hit_rate_essential
    annotations:
      units_term:
        tag: units_term
        value: UO:0000190
      type_term:
        tag: type_term
        value: ME:0000264
    description: hit_rate_essential field for TnSeq_Library
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: tnseq_library_hit_rate_essential
    owner: TnSeq_Library
    domain_of:
    - TnSeq_Library
    range: float
  tnseq_library_hit_rate_other:
    name: tnseq_library_hit_rate_other
    annotations:
      units_term:
        tag: units_term
        value: UO:0000190
      type_term:
        tag: type_term
        value: ME:0000264
    description: hit_rate_other field for TnSeq_Library
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: tnseq_library_hit_rate_other
    owner: TnSeq_Library
    domain_of:
    - TnSeq_Library
    range: float