Class: Sample

Sample entity in the ENIGMA data model

classDiagram class Sample click Sample href "../Sample/" Sample : sample_date Sample : sample_depth Sample : sample_description Sample : sample_elevation Sample : sample_env_package Sample : sample_id Sample : sample_location Sample --> "1" Location : sample_location click Location href "../Location/" Sample : sample_material Sample : sample_name Sample : sample_time Sample : sample_timezone

Slots

Name	Cardinality and Range	Description	Inheritance
sample_id	1 String	id field for Sample	direct
sample_name	1 String	name field for Sample	direct
sample_location	1 Location	location field for Sample	direct
sample_depth	0..1 Depth	depth field for Sample	direct
sample_elevation	0..1 Elevation	elevation field for Sample	direct
sample_date	1 Date	date field for Sample	direct
sample_time	0..1 Time	time field for Sample	direct
sample_timezone	0..1 Time	timezone field for Sample	direct
sample_material	0..1 String	material field for Sample	direct
sample_env_package	1 String	env_package field for Sample	direct
sample_description	0..1 String	description field for Sample	direct

Usages

used by	used in	type	used
Community	community_sample	range	Sample

Identifier and Mapping Information

Annotations

property	value
term	DA:0000042
used_for_provenance	True
process_types	['PROCESS:0000002']
process_inputs	[['Location']]

Schema Source

from schema: https://w3id.org/enigma/enigma-cdm

Mappings

Mapping Type	Mapped Value
self	enigma:Sample
native	enigma:Sample

LinkML Source

Direct

name: Sample
annotations:
  term:
    tag: term
    value: DA:0000042
  used_for_provenance:
    tag: used_for_provenance
    value: true
  process_types:
    tag: process_types
    value:
    - PROCESS:0000002
  process_inputs:
    tag: process_inputs
    value:
    - - Location
description: Sample entity in the ENIGMA data model
from_schema: https://w3id.org/enigma/enigma-cdm
slots:
- sample_id
- sample_name
- sample_location
- sample_depth
- sample_elevation
- sample_date
- sample_time
- sample_timezone
- sample_material
- sample_env_package
- sample_description

Induced

name: Sample
annotations:
  term:
    tag: term
    value: DA:0000042
  used_for_provenance:
    tag: used_for_provenance
    value: true
  process_types:
    tag: process_types
    value:
    - PROCESS:0000002
  process_inputs:
    tag: process_inputs
    value:
    - - Location
description: Sample entity in the ENIGMA data model
from_schema: https://w3id.org/enigma/enigma-cdm
attributes:
  sample_id:
    name: sample_id
    annotations:
      type_term:
        tag: type_term
        value: ME:0000267
      microtype:
        tag: microtype
        value: ME:0000267
      microtype_data_type:
        tag: microtype_data_type
        value: object_ref
    description: id field for Sample
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    identifier: true
    alias: sample_id
    owner: Sample
    domain_of:
    - Sample
    range: string
    required: true
  sample_name:
    name: sample_name
    annotations:
      unique:
        tag: unique
        value: true
      type_term:
        tag: type_term
        value: ME:0000102
      microtype:
        tag: microtype
        value: ME:0000102
      microtype_data_type:
        tag: microtype_data_type
        value: object_ref
    description: name field for Sample
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: sample_name
    owner: Sample
    domain_of:
    - Sample
    range: string
    required: true
  sample_location:
    name: sample_location
    annotations:
      foreign_key:
        tag: foreign_key
        value: Location.name
      type_term:
        tag: type_term
        value: ME:0000228
      microtype:
        tag: microtype
        value: ME:0000228
      microtype_data_type:
        tag: microtype_data_type
        value: object_ref
    description: location field for Sample
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: sample_location
    owner: Sample
    domain_of:
    - Sample
    range: Location
    required: true
  sample_depth:
    name: sample_depth
    annotations:
      units_term:
        tag: units_term
        value: UO:0000008
      type_term:
        tag: type_term
        value: ME:0000219
      microtype:
        tag: microtype
        value: ME:0000219
      microtype_data_type:
        tag: microtype_data_type
        value: float
    description: depth field for Sample
    comments:
    - in meters below ground level
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: sample_depth
    owner: Sample
    domain_of:
    - Sample
    range: Depth
  sample_elevation:
    name: sample_elevation
    annotations:
      units_term:
        tag: units_term
        value: UO:0000008
      type_term:
        tag: type_term
        value: ME:0000220
      microtype:
        tag: microtype
        value: ME:0000220
      microtype_data_type:
        tag: microtype_data_type
        value: float
    description: elevation field for Sample
    comments:
    - in meters above ground level
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: sample_elevation
    owner: Sample
    domain_of:
    - Sample
    range: Elevation
  sample_date:
    name: sample_date
    annotations:
      type_term:
        tag: type_term
        value: ME:0000009
      microtype:
        tag: microtype
        value: ME:0000009
      microtype_data_type:
        tag: microtype_data_type
        value: string
    description: date field for Sample
    comments:
    - YYYY[-MM[-DD]]
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: sample_date
    owner: Sample
    domain_of:
    - Sample
    range: Date
    required: true
  sample_time:
    name: sample_time
    annotations:
      type_term:
        tag: type_term
        value: ME:0000010
      microtype:
        tag: microtype
        value: ME:0000010
      microtype_data_type:
        tag: microtype_data_type
        value: string
    description: time field for Sample
    comments:
    - HH[:MM[:SS]] [AM|PM]
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: sample_time
    owner: Sample
    domain_of:
    - Sample
    range: Time
  sample_timezone:
    name: sample_timezone
    annotations:
      type_term:
        tag: type_term
        value: ME:0000201
      microtype:
        tag: microtype
        value: ME:0000201
      microtype_data_type:
        tag: microtype_data_type
        value: string
    description: timezone field for Sample
    comments:
    - ISO8601 compliant format, ie. UTC-7
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: sample_timezone
    owner: Sample
    domain_of:
    - Sample
    range: Time
  sample_material:
    name: sample_material
    annotations:
      constraint:
        tag: constraint
        value: ENVO:00010483
      type_term:
        tag: type_term
        value: ME:0000230
      microtype:
        tag: microtype
        value: ME:0000230
      microtype_data_type:
        tag: microtype_data_type
        value: oterm_ref
    description: material field for Sample
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: sample_material
    owner: Sample
    domain_of:
    - Sample
    range: string
  sample_env_package:
    name: sample_env_package
    annotations:
      constraint:
        tag: constraint
        value: MIxS:0000002
      type_term:
        tag: type_term
        value: ME:0000229
      microtype:
        tag: microtype
        value: ME:0000229
      microtype_data_type:
        tag: microtype_data_type
        value: oterm_ref
    description: env_package field for Sample
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: sample_env_package
    owner: Sample
    domain_of:
    - Sample
    range: string
    required: true
  sample_description:
    name: sample_description
    annotations:
      type_term:
        tag: type_term
        value: ME:0000202
      microtype:
        tag: microtype
        value: ME:0000202
      microtype_data_type:
        tag: microtype_data_type
        value: string
    description: description field for Sample
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: sample_description
    owner: Sample
    domain_of:
    - Sample
    range: string