Class: Reads

Reads entity in the ENIGMA data model

classDiagram class Reads click Reads href "../Reads/" Reads : reads_id Reads : reads_link Reads : reads_name Reads : reads_read_count Reads : reads_read_type Reads --> "1" ReadTypeEnum : reads_read_type click ReadTypeEnum href "../ReadTypeEnum/" Reads : reads_sequencing_technology Reads --> "1" SequencingTechnologyEnum : reads_sequencing_technology click SequencingTechnologyEnum href "../SequencingTechnologyEnum/"

Slots

Name	Cardinality and Range	Description	Inheritance
reads_id	1 String	id field for Reads	direct
reads_name	1 String	name field for Reads	direct
reads_read_count	1 Count	read_count field for Reads	direct
reads_read_type	1 ReadTypeEnum	read_type field for Reads	direct
reads_sequencing_technology	1 SequencingTechnologyEnum	sequencing_technology field for Reads	direct
reads_link	1 Link	link field for Reads	direct

Identifier and Mapping Information

Annotations

property	value
term	DA:0000054
used_for_provenance	True
process_types	['PROCESS:0000017']
process_inputs	[['Sample'], ['Community']]

Schema Source

from schema: https://w3id.org/enigma/enigma-cdm

Mappings

Mapping Type	Mapped Value
self	enigma:Reads
native	enigma:Reads

LinkML Source

Direct

name: Reads
annotations:
  term:
    tag: term
    value: DA:0000054
  used_for_provenance:
    tag: used_for_provenance
    value: true
  process_types:
    tag: process_types
    value:
    - PROCESS:0000017
  process_inputs:
    tag: process_inputs
    value:
    - - Sample
    - - Community
description: Reads entity in the ENIGMA data model
from_schema: https://w3id.org/enigma/enigma-cdm
slots:
- reads_id
- reads_name
- reads_read_count
- reads_read_type
- reads_sequencing_technology
- reads_link

Induced

name: Reads
annotations:
  term:
    tag: term
    value: DA:0000054
  used_for_provenance:
    tag: used_for_provenance
    value: true
  process_types:
    tag: process_types
    value:
    - PROCESS:0000017
  process_inputs:
    tag: process_inputs
    value:
    - - Sample
    - - Community
description: Reads entity in the ENIGMA data model
from_schema: https://w3id.org/enigma/enigma-cdm
attributes:
  reads_id:
    name: reads_id
    annotations:
      type_term:
        tag: type_term
        value: ME:0000273
      microtype:
        tag: microtype
        value: ME:0000273
      microtype_data_type:
        tag: microtype_data_type
        value: object_ref
    description: id field for Reads
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    identifier: true
    alias: reads_id
    owner: Reads
    domain_of:
    - Reads
    range: string
    required: true
  reads_name:
    name: reads_name
    annotations:
      unique:
        tag: unique
        value: true
      type_term:
        tag: type_term
        value: ME:0000248
      microtype:
        tag: microtype
        value: ME:0000248
      microtype_data_type:
        tag: microtype_data_type
        value: object_ref
    description: name field for Reads
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: reads_name
    owner: Reads
    domain_of:
    - Reads
    range: string
    required: true
  reads_read_count:
    name: reads_read_count
    annotations:
      units_term:
        tag: units_term
        value: UO:0000189
      type_term:
        tag: type_term
        value: ME:0000126
      microtype:
        tag: microtype
        value: ME:0000126
      microtype_data_type:
        tag: microtype_data_type
        value: int
    description: read_count field for Reads
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: reads_read_count
    owner: Reads
    domain_of:
    - Reads
    range: Count
    required: true
  reads_read_type:
    name: reads_read_type
    annotations:
      type_term:
        tag: type_term
        value: ME:0000112
      microtype:
        tag: microtype
        value: ME:0000112
      microtype_data_type:
        tag: microtype_data_type
        value: oterm_ref
    description: read_type field for Reads
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: reads_read_type
    owner: Reads
    domain_of:
    - Reads
    range: ReadTypeEnum
    required: true
  reads_sequencing_technology:
    name: reads_sequencing_technology
    annotations:
      type_term:
        tag: type_term
        value: ME:0000116
      microtype:
        tag: microtype
        value: ME:0000116
      microtype_data_type:
        tag: microtype_data_type
        value: oterm_ref
    description: sequencing_technology field for Reads
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: reads_sequencing_technology
    owner: Reads
    domain_of:
    - Reads
    range: SequencingTechnologyEnum
    required: true
  reads_link:
    name: reads_link
    annotations:
      type_term:
        tag: type_term
        value: ME:0000203
      microtype:
        tag: microtype
        value: ME:0000203
      microtype_data_type:
        tag: microtype_data_type
        value: string
    description: link field for Reads
    from_schema: https://w3id.org/enigma/enigma-cdm
    rank: 1000
    alias: reads_link
    owner: Reads
    domain_of:
    - Reads
    range: Link
    required: true