Enum: BiologicalContextEnum

Biological Context.

URI: enigma:BiologicalContextEnum

Permissible Values

Value	Meaning	Description
cell	None	Cell
colony	None	Colony
strain	None	Strain of microbe, or isolate ID
taxon	None	Taxon
media	None	Media type
metabolite	None	Metabolite
enzyme_substrate	None	Enzyme Substrate
gene	None	Gene
protein	None	Protein
protein_annotation	None	Protein Annotation
operon	None	Operon
ribosome	None	Ribosome
growth_parameter	None	Growth Parameter
gene_regulation	None	Gene Regulation
taxonomic_level	None	Taxonomic Level
strain_change	None	Strain Change
knockout	None	Knockout
environment	None	Environment
ecology	None	Ecology
sequencing	None	Sequencing
asv	None	Amplicon Sequence Variant
esv	None	ESV
community	None	Community
genome	None	Genome
gene_annotation	None	Gene Annotation
knockout_library	None	Knockout Library
assembly	None	Assembly
bin	None	Bin (metagenomic)
overexpression_library	None	Overexpression Library
growth_stage	None	Growth Stage
otu	None	OTU

Identifier and Mapping Information

Annotations

property	value
microtype	ME:0000039
microtype_data_type	oterm_ref

Schema Source

• from schema: https://w3id.org/enigma/enigma-cdm

LinkML Source

name: BiologicalContextEnum
annotations:
  microtype:
    tag: microtype
    value: ME:0000039
  microtype_data_type:
    tag: microtype_data_type
    value: oterm_ref
description: Biological Context.
from_schema: https://w3id.org/enigma/enigma-cdm
rank: 1000
permissible_values:
  cell:
    text: cell
    description: Cell.
    annotations:
      term:
        tag: term
        value: ME:0000040
    title: Cell
  colony:
    text: colony
    description: Colony.
    annotations:
      term:
        tag: term
        value: ME:0000041
    title: Colony
  strain:
    text: strain
    description: Strain of microbe, or isolate ID.
    annotations:
      term:
        tag: term
        value: ME:0000042
    title: Strain
  taxon:
    text: taxon
    description: Taxon.
    annotations:
      term:
        tag: term
        value: ME:0000045
    title: Taxon
  media:
    text: media
    description: Media type.
    annotations:
      term:
        tag: term
        value: ME:0000048
    title: Media
  metabolite:
    text: metabolite
    description: Metabolite.
    annotations:
      term:
        tag: term
        value: ME:0000053
    title: Metabolite
  enzyme_substrate:
    text: enzyme_substrate
    description: Enzyme Substrate.
    annotations:
      term:
        tag: term
        value: ME:0000054
    title: Enzyme Substrate
  gene:
    text: gene
    description: Gene.
    annotations:
      term:
        tag: term
        value: ME:0000059
    title: Gene
  protein:
    text: protein
    description: Protein.
    annotations:
      term:
        tag: term
        value: ME:0000066
    title: Protein
  protein_annotation:
    text: protein_annotation
    description: Protein Annotation.
    annotations:
      term:
        tag: term
        value: ME:0000067
    title: Protein Annotation
  operon:
    text: operon
    description: Operon.
    annotations:
      term:
        tag: term
        value: ME:0000076
    title: Operon
  ribosome:
    text: ribosome
    description: Ribosome.
    annotations:
      term:
        tag: term
        value: ME:0000077
    title: Ribosome
  growth_parameter:
    text: growth_parameter
    description: Growth Parameter.
    annotations:
      term:
        tag: term
        value: ME:0000078
    title: Growth Parameter
  gene_regulation:
    text: gene_regulation
    description: Gene Regulation.
    annotations:
      term:
        tag: term
        value: ME:0000083
    title: Gene Regulation
  taxonomic_level:
    text: taxonomic_level
    description: Taxonomic Level.
    annotations:
      term:
        tag: term
        value: ME:0000090
    title: Taxonomic Level
  strain_change:
    text: strain_change
    description: Strain Change.
    annotations:
      term:
        tag: term
        value: ME:0000091
    title: Strain Change
  knockout:
    text: knockout
    description: Knockout.
    annotations:
      term:
        tag: term
        value: ME:0000097
    title: Knockout
  environment:
    text: environment
    description: Environment.
    annotations:
      term:
        tag: term
        value: ME:0000098
    title: Environment
  ecology:
    text: ecology
    description: Ecology.
    annotations:
      term:
        tag: term
        value: ME:0000104
    title: Ecology
  sequencing:
    text: sequencing
    description: Sequencing.
    annotations:
      term:
        tag: term
        value: ME:0000111
    title: Sequencing
  asv:
    text: asv
    description: Amplicon Sequence Variant.
    annotations:
      term:
        tag: term
        value: ME:0000184
    title: ASV
  esv:
    text: esv
    description: ESV.
    annotations:
      term:
        tag: term
        value: ME:0000185
    title: ESV
  community:
    text: community
    description: Community.
    annotations:
      term:
        tag: term
        value: ME:0000231
    title: Community
  genome:
    text: genome
    description: Genome.
    annotations:
      term:
        tag: term
        value: ME:0000245
    title: Genome
  gene_annotation:
    text: gene_annotation
    description: Gene Annotation.
    annotations:
      term:
        tag: term
        value: ME:0000250
    title: Gene Annotation
  knockout_library:
    text: knockout_library
    description: Knockout Library.
    annotations:
      term:
        tag: term
        value: ME:0000260
    title: Knockout Library
  assembly:
    text: assembly
    description: Assembly.
    annotations:
      term:
        tag: term
        value: ME:0000279
    title: Assembly
  bin:
    text: bin
    description: Bin (metagenomic).
    annotations:
      term:
        tag: term
        value: ME:0000329
    title: Bin
  overexpression_library:
    text: overexpression_library
    description: Overexpression Library.
    annotations:
      term:
        tag: term
        value: ME:0000395
    title: Overexpression Library
  growth_stage:
    text: growth_stage
    description: Growth Stage.
    annotations:
      term:
        tag: term
        value: ME:0000416
    title: Growth Stage
  otu:
    text: otu
    description: OTU.
    annotations:
      term:
        tag: term
        value: ME:0000479
    title: OTU